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Molecular Biology and Evolution|March 20, 2012
Detecting patches of protein sites of influenza A viruses under positive selectionChristina Tusche, Lars Steinbrück, Alice C McHardyEMBO Molecular Medicine|February 13, 2020
Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnosticsAriane Khaledi, Aaron Weimann, Monika Schniederjans, et al.Bioinformatics (Oxford, England)|June 23, 2017
EDEN: evolutionary dynamics within environmentsPhilipp C Münch, Bärbel Stecher, Alice C McHardyBMC Bioinformatics|May 11, 2011
Inferring functional modules of protein families with probabilistic topic modelsSebastian Ga Konietzny, Laura Dietz, Alice C McHardyBioinformatics (Oxford, England)|May 7, 2016
MeCorS: Metagenome-enabled error correction of single cell sequencing readsAndreas Bremges, Esther Singer, Tanja Woyke, et al.Cell Host & Microbe|June 6, 2023
Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effectsPhilipp C Münch, Claudia Eberl, Simon Woelfel, et al.Plos Computational Biology|August 11, 2022
Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithmMohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Alice C McHardyProteomics|January 20, 2004
Comparing expression level-dependent features in codon usage with protein abundance: an analysis of 'predictive proteomics'Alice C McHardy, Alfred Pühler, Jörn Kalinowski, et al.Scientific Reports|March 7, 2019
Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)Ehsaneddin Asgari, Alice C McHardy, Mohammad R K MofradBioinformatics (Oxford, England)|February 28, 2004
Development of joint application strategies for two microbial gene findersAlice C McHardy, Alexander Goesmann, Alfred Pühler, et al.Pageof 13