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Nature Reviews. Genetics|October 1, 2014
Microbial genome-enabled insights into plant-microorganism interactionsDavid S Guttman, Alice C McHardy, Paul Schulze-Lefert
Peerj|November 5, 2016
The PARA-suite: PAR-CLIP specific sequence read simulation and processingAndreas Kloetgen, Arndt Borkhardt, Jessica I Hoell, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 30, 2021
TripletProt: Deep Representation Learning of Proteins Based On Siamese NetworksEsmaeil Nourani, Ehsaneddin Asgari, Alice C McHardy, et al.
Biotechnology for Biofuels|October 25, 2014
Inference of phenotype-defining functional modules of protein families for microbial plant biomass degradersSebastian Ga Konietzny, Phillip B Pope, Aaron Weimann, et al.
Trends in Microbiology|October 17, 2017
In Silico Vaccine Strain Prediction for Human Influenza VirusesThorsten R Klingen, Susanne Reimering, Carlos A Guzmán, et al.
Journal of Biotechnology|September 2, 2003
Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicumAlice C McHardy, Andreas Tauch, Christian Rückert, et al.
Bioinformatics (Oxford, England)|June 29, 2018
MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samplesEhsaneddin Asgari, Kiavash Garakani, Alice C McHardy, et al.
Bioinformatics (Oxford, England)|February 14, 2023
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotationsAndrew Dickson, Ehsaneddin Asgari, Alice C McHardy, et al.
Applied Bioinformatics|August 23, 2006
REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotesBurkhard Linke, Alice C McHardy, Heiko Neuweger, et al.
Peerj|February 13, 2016
PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomesIvan Gregor, Johannes Dröge, Melanie Schirmer, et al.
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