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The Journal of Physical Chemistry. B|January 26, 2007
Probing polar solvation dynamics in proteins: a molecular dynamics simulation analysisAndrei A Golosov, Martin KarplusStructure (London, England : 1993)|February 16, 2010
The mechanism of the translocation step in DNA replication by DNA polymerase I: a computer simulation analysisAndrei A Golosov, Joshua J Warren, Lorena S Beese, et al.Journal of Chemical Information and Modeling|March 30, 2023
Benchmarking <i>In Silico</i> Tools for Cysteine p<i>K</i><sub>a</sub> PredictionErnest Awoonor-Williams, Andrei A Golosov, Viktor HornakBiopolymers|February 26, 2003
Molecular dynamics of biological macromolecules: a brief history and perspectiveMartin KarplusAnnual Review of Biophysics and Biomolecular Structure|May 13, 2006
Spinach on the ceiling: a theoretical chemist's return to biologyMartin KarplusJournal of Chemical Information and Modeling|January 9, 2025
CovCysPredictor: Predicting Selective Covalently Modifiable Cysteines Using Protein Structure and Interpretable Machine LearningBryn Marie Reimer, Ernest Awoonor-Williams, Andrei A Golosov, et al.Proceedings of the National Academy of Sciences of the United States of America|September 12, 2019
Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteinsWonmuk Hwang, Martin KarplusJournal of Molecular Biology|September 6, 2005
Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinasePaul Maragakis, Martin KarplusThe Journal of Physical Chemistry. B|February 24, 2006
Two-metal-ion mechanism for hammerhead-ribozyme catalysisFabrice Leclerc, Martin KarplusPageof 17