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Journal of Molecular Modeling|February 10, 2009
Binding free energy calculations of N-sulphonyl-glutamic acid inhibitors of MurD ligaseAndrej Perdih, Urban Bren, Tom SolmajerProteins|August 16, 2008
MurD ligase from E. coli: Tetrahedral intermediate formation study by hybrid quantum mechanical/molecular mechanical replica path methodAndrej Perdih, Milan Hodoscek, Tom SolmajerInternational Journal of Biological Macromolecules|May 7, 2024
Molecular choreography: Unveiling the dynamic landscape of type IIA DNA topoisomerases before T-segment passage through all-atom simulationsBarbara Herlah, Matic Pavlin, Andrej PerdihJournal of Chemical Information and Modeling|December 2, 2024
All-Atom Simulations Reveal the Effect of Membrane Composition on the Signaling of the NKG2A/CD94/HLA-E Immune Receptor ComplexMartin Ljubič, Andrej Perdih, Jure BorišekJournal of Chemical Information and Modeling|May 19, 2023
All-Atom Simulations Reveal the Intricacies of Signal Transduction upon Binding of the HLA-E Ligand to the Transmembrane Inhibitory CD94/NKG2A ReceptorMartin Ljubič, Eva Prašnikar, Andrej Perdih, et al.Proteins|April 13, 2007
Targeted molecular dynamics simulation studies of binding and conformational changes in E. coli MurDAndrej Perdih, Miha Kotnik, Milan Hodoscek, et al.International Journal of Biological Macromolecules|August 31, 2025
Asymmetric T-segment binding and gate dynamics govern the final stages of the type IIA topoisomerase catalytic cycleKristina Stevanović, Barbara Herlah, Matic Pavlin, et al.Computational and Structural Biotechnology Journal|August 21, 2023
Unveiling the interdomain dynamics of type II DNA topoisomerase through all-atom simulations: Implications for understanding its catalytic cycleMatic Pavlin, Barbara Herlah, Katja Valjavec, et al.Journal of Chemical Information and Modeling|August 10, 2022
Catalytic Mechanism of ATP Hydrolysis in the ATPase Domain of Human DNA Topoisomerase IIαMitja Ogrizek, Matej Janežič, Katja Valjavec, et al.Journal of Computational Chemistry|January 3, 2013
Cluster-based molecular docking study for in silico identification of novel 6-fluoroquinolones as potential inhibitors against Mycobacterium tuberculosisNikola Minovski, Andrej Perdih, Marjana Novic, et al.Pageof 7