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Computational Biology and Chemistry|August 23, 2015
Reprint of "Abstraction for data integration: Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction"Andrew D Rouillard, Zichen Wang, Avi Ma'ayanTrends in Pharmacological Sciences|August 12, 2014
Lean Big Data integration in systems biology and systems pharmacologyAvi Ma'ayan, Andrew D Rouillard, Neil R Clark, et al.F1000Research|September 2, 2016
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus studyZichen Wang, Avi Ma'ayanBioinformatics (Oxford, England)|August 8, 2014
Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasetsQiaonan Duan, Zichen Wang, Nicolas F Fernandez, et al.Database : the Journal of Biological Databases and Curation|July 5, 2016
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteinsAndrew D Rouillard, Gregory W Gundersen, Nicolas F Fernandez, et al.Biophysical Reviews|December 31, 2018
Mining data and metadata from the gene expression omnibusZichen Wang, Alexander Lachmann, Avi Ma'ayanBioinformatics (Oxford, England)|May 7, 2016
Drug-induced adverse events prediction with the LINCS L1000 dataZichen Wang, Neil R Clark, Avi Ma'ayanBMC Systems Biology|June 7, 2015
Dynamics of the discovery process of protein-protein interactions from low content studiesZichen Wang, Neil R Clark, Avi Ma'ayanBioinformatics (Oxford, England)|February 9, 2018
L1000FWD: fireworks visualization of drug-induced transcriptomic signaturesZichen Wang, Alexander Lachmann, Alexandra B Keenan, et al.Biodata Mining|February 8, 2019
Predicting opioid dependence from electronic health records with machine learningRandall J Ellis, Zichen Wang, Nicholas Genes, et al.Pageof 53