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Proceedings of the National Academy of Sciences of the United States of America|January 26, 2005
Identifying tissue-selective transcription factor binding sites in vertebrate promotersAndrew D Smith, Pavel Sumazin, Michael Q ZhangMolecular Systems Biology|January 17, 2007
Tissue-specific regulatory elements in mammalian promotersAndrew D Smith, Pavel Sumazin, Michael Q ZhangProceedings of the National Academy of Sciences of the United States of America|April 12, 2006
DNA motifs in human and mouse proximal promoters predict tissue-specific expressionAndrew D Smith, Pavel Sumazin, Zhenyu Xuan, et al.Bioinformatics (Oxford, England)|June 18, 2005
Mining ChIP-chip data for transcription factor and cofactor binding sitesAndrew D Smith, Pavel Sumazin, Debopriya Das, et al.Bioinformatics (Oxford, England)|August 31, 2004
DWE: discriminating word enumeratorPavel Sumazin, Gengxin Chen, Naoya Hata, et al.Bioinformatics (Oxford, England)|August 21, 2004
Similarity of position frequency matrices for transcription factor binding sitesDustin E Schones, Pavel Sumazin, Michael Q ZhangIn Silico Biology|October 28, 2004
Genome-wide prediction and analysis of function-specific transcription factor binding sitesFan Long, Hong Liu, Chang Hahn, et al.BMC Bioinformatics|March 1, 2008
Using quality scores and longer reads improves accuracy of Solexa read mappingAndrew D Smith, Zhenyu Xuan, Michael Q ZhangBMC Bioinformatics|January 24, 2007
Statistical significance of cis-regulatory modulesDustin E Schones, Andrew D Smith, Michael Q ZhangJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 26, 2003
Deconvolving sequence variation in mixed DNA populationsAndy Wildenberg, Steven Skiena, Pavel SumazinPageof 70