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Bioinformatics (Oxford, England)|July 10, 2024
Fine-tuning protein embeddings for functional similarity evaluationAndrew Dickson, Mohammad R K MofradMsystems|April 4, 2025
<i>Meta</i>Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communitiesJavad Aminian-Dehkordi, Andrew Dickson, Amin Valiei, et al.NPJ Biofilms and Microbiomes|October 2, 2024
Metabolic interactions shape emergent biofilm structures in a conceptual model of gut mucosal bacterial communitiesAmin Valiei, Andrew Dickson, Javad Aminian-Dehkordi, et al.Bioinformatics (Oxford, England)|February 14, 2023
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotationsAndrew Dickson, Ehsaneddin Asgari, Alice C McHardy, et al.NPJ Systems Biology and Applications|December 12, 2025
SIMBA-GNN: mechanistic graph learning for microbiome predictionJavad Aminian-Dehkordi, Mohammad Parsa, Andrew Dickson, et al.Plos Computational Biology|April 7, 2025
Role of pore dilation in molecular transport through the nuclear pore complex: Insights from polymer scaling theoryAtsushi Matsuda, Mohammad R K MofradPlos One|November 28, 2013
Higher nucleoporin-Importinβ affinity at the nuclear basket increases nucleocytoplasmic importMohammad Azimi, Mohammad R K MofradAPL Bioengineering|March 21, 2022
On the nuclear pore complex and its emerging role in cellular mechanotransductionAtsushi Matsuda, Mohammad R K MofradMolecular Biology of the Cell|October 30, 2024
Regulating transport efficiency through the nuclear pore complex: The role of binding affinity with FG-NupsAtsushi Matsuda, Mohammad R K MofradBiophysical Journal|May 20, 2008
On the octagonal structure of the nuclear pore complex: insights from coarse-grained modelsChristopher Wolf, Mohammad R K MofradPageof 16