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Bioinformatics (Oxford, England)|June 10, 2009
Rapid detection, classification and accurate alignment of up to a million or more related protein sequencesAndrew F NeuwaldTrends in Biochemical Sciences|June 13, 2006
Bayesian shadows of molecular mechanisms cast in the light of evolutionAndrew F NeuwaldProtein Science : a Publication of the Protein Society|July 27, 2004
Evolutionary constraints associated with functional specificity of the CMGC protein kinases MAPK, CDK, GSK, SRPK, DYRK, and CK2alphaNatarajan Kannan, Andrew F NeuwaldJournal of Molecular Biology|July 30, 2005
Did protein kinase regulatory mechanisms evolve through elaboration of a simple structural component?Natarajan Kannan, Andrew F NeuwaldBMC Bioinformatics|October 27, 2004
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov modelAndrew F Neuwald, Jun S LiuImmunogenetics|February 1, 2020
A survey of TIR domain sequence and structure divergenceVladimir Y Toshchakov, Andrew F NeuwaldBioinformatics (Oxford, England)|October 29, 2004
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositionsYi-Kuo Yu, Stephen F AltschulJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 28, 2011
The complexity of the dirichlet model for multiple alignment dataYi-Kuo Yu, Stephen F AltschulComputational and Structural Biotechnology Journal|May 2, 2022
SPARC: Structural properties associated with residue constraintsAndrew F Neuwald, Hui Yang, B Tracy NixonBiochimica Et Biophysica Acta|November 6, 2007
Analogous regulatory sites within the alphaC-beta4 loop regions of ZAP-70 tyrosine kinase and AGC kinasesNatarajan Kannan, Andrew F Neuwald, Susan S TaylorPageof 7