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Plos Computational Biology|July 22, 2021
ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elementsXi Chen, Andrew F Neuwald, Leena Hilakivi-Clarke, et al.Database : the Journal of Biological Databases and Curation|June 6, 2020
Obtaining extremely large and accurate protein multiple sequence alignments from curated hierarchical alignmentsAndrew F Neuwald, Christopher J Lanczycki, Theresa K Hodges, et al.Plos Computational Biology|July 27, 2010
The construction and use of log-odds substitution scores for multiple sequence alignmentStephen F Altschul, John C Wootton, Elena Zaslavsky, et al.Bioinformatics (Oxford, England)|July 1, 2008
The effectiveness of position- and composition-specific gap costs for protein similarity searchesAleksandar Stojmirović, E Michael Gertz, Stephen F Altschul, et al.Scientific Reports|September 4, 2021
A Bayesian approach for accurate de novo transcriptome assemblyXu Shi, Xiao Wang, Andrew F Neuwald, et al.Cell|October 9, 2003
Differential contributions of condensin I and condensin II to mitotic chromosome architecture in vertebrate cellsTakao Ono, Ana Losada, Michiko Hirano, et al.Scientific Reports|October 8, 2020
Author Correction: BICORN: An R package for integrative inference of de novo cis-regulatory modulesXi Chen, Jinghua Gu, Andrew F Neuwald, et al.Scientific Reports|May 16, 2020
BICORN: An R package for integrative inference of de novo cis-regulatory modulesXi Chen, Jinghua Gu, Andrew F Neuwald, et al.Scientific Reports|January 12, 2021
Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrenceXi Chen, Jinghua Gu, Andrew F Neuwald, et al.BMC Bioinformatics|April 16, 2021
ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approachXi Chen, Xu Shi, Andrew F Neuwald, et al.Pageof 7