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Bioinformatics (Oxford, England)|October 9, 2014
Log-odds sequence logosYi-Kuo Yu, John A Capra, Aleksandar Stojmirović, et al.Journal of Bacteriology|October 13, 2009
A typhus group-specific protease defies reductive evolution in rickettsiaeNicole C Ammerman, Joseph J Gillespie, Andrew F Neuwald, et al.BMC Biology|December 13, 2006
Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLASTE Michael Gertz, Yi-Kuo Yu, Richa Agarwala, et al.Plos Computational Biology|January 31, 2025
Bayesian identification of differentially expressed isoforms using a novel joint model of RNA-seq dataXu Shi, Xiao Wang, Lu Jin, et al.Nucleic Acids Research|October 28, 2006
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searchesYi-Kuo Yu, E Michael Gertz, Richa Agarwala, et al.Molecular Biology of the Cell|June 1, 2004
Proteomic analysis of interchromatin granule clustersNoriko Saitoh, Chris S Spahr, Scott D Patterson, et al.Nucleic Acids Research|December 18, 2008
PSI-BLAST pseudocounts and the minimum description length principleStephen F Altschul, E Michael Gertz, Richa Agarwala, et al.Methods (San Diego, Calif.)|December 14, 2004
Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resourcesJannik N Andersen, Robert L Del Vecchio, Natarajan Kannan, et al.Bioinformatics (Oxford, England)|October 5, 2020
IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profilesXu Shi, Andrew F Neuwald, Xiao Wang, et al.International Journal of Molecular Sciences|March 25, 2022
Identifying Function Determining Residues in Neuroimmune Semaphorin 4ASvetlana P Chapoval, Mariah Lee, Aaron Lemmer, et al.Pageof 7