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Bioinformatics Advances|December 4, 2023
TaxaHFE: a machine learning approach to collapse microbiome datasets using taxonomic structureAndrew Oliver, Matthew Kay, Danielle G LemayThe Journal of Nutrition|September 3, 2025
Gut microbiome genes involved in plant and mucin breakdown correlate with diet and gastrointestinal inflammation in healthy US adultsSarah E Blecksmith, Andrew Oliver, Zeynep Alkan, et al.BMC Genomics|May 3, 2018
Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolationAndrew Oliver, Matthew Kay, Kerry K CooperThe Journal of Nutrition|August 22, 2024
Diet, Microbiome, and Inflammation Predictors of Fecal and Plasma Short-Chain Fatty Acids in HumansAndrew Oliver, Zeynep Alkan, Charles B Stephensen, et al.Food & Function|August 29, 2025
Association of lactose intake and lactase persistence genotype with microbial taxa and function in healthy multi-ethnic U.S. adultsYirui Tang, Andrew Oliver, Zeynep Alkan, et al.Food & Function|June 16, 2026
Association between dietary polyphenol intake and polyphenol-utilizing bacteria in healthy adultsStephanie M G Wilson, Andrew Oliver, Zeynep Alkan, et al.Journal of Lipid Research|April 6, 2006
Genome-wide identification of peroxisome proliferator response elements using integrated computational genomicsDanielle G Lemay, Daniel H HwangJournal of the Academy of Nutrition and Dietetics|May 30, 2025
Machine Learning With Ingredient-Level Food Trees Reveals Contributors to Systemic Inflammation Among Adults in the National Health and Nutrition Examination Survey, 2001-2010 and 2015-2018Jules A Larke, Danielle G LemayThe Journal of Nutrition|August 20, 2024
Fine-Scale Dietary Polyphenol Intake Is Associated with Systemic and Gastrointestinal Inflammation in Healthy AdultsStephanie Mg Wilson, Andrew Oliver, Jules A Larke, et al.Trends in Food Science & Technology|December 24, 2013
Milk Fat Globule structure & function; nanosciece comes to milk productionNurit Argov, Danielle G Lemay, J Bruce GermanPageof 14