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The American Journal of Clinical Nutrition|November 10, 2007
Building the bridges to bioinformatics in nutrition researchDanielle G Lemay, Angela M Zivkovic, J Bruce GermanBMC Bioinformatics|October 1, 2016
SAMSA: a comprehensive metatranscriptome analysis pipelineSamuel T Westreich, Ian Korf, David A Mills, et al.BMC Microbiology|August 26, 2015
Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cellsSaumya Wickramasinghe, Alline R Pacheco, Danielle G Lemay, et al.American Journal of Physiology. Gastrointestinal and Liver Physiology|March 10, 2015
Changes in intestinal barrier function and gut microbiota in high-fat diet-fed rats are dynamic and region dependentM Kristina Hamilton, Gaëlle Boudry, Danielle G Lemay, et al.Scientific Reports|June 26, 2023
Creation of a milk oligosaccharide database, MilkOligoDB, reveals common structural motifs and extensive diversity across mammalsSierra D Durham, Zhe Wei, Danielle G Lemay, et al.Microbiome|June 28, 2020
Reservoirs of antimicrobial resistance genes in retail raw milkJinxin Liu, Yuanting Zhu, Michele Jay-Russell, et al.IEEE Transactions on Visualization and Computer Graphics|October 26, 2023
ggdist: Visualizations of Distributions and Uncertainty in the Grammar of GraphicsMatthew KayBMC Bioinformatics|May 23, 2018
SAMSA2: a standalone metatranscriptome analysis pipelineSamuel T Westreich, Michelle L Treiber, David A Mills, et al.The Journal of Nutrition|December 27, 2021
Tree-Based Analysis of Dietary Diversity Captures Associations Between Fiber Intake and Gut Microbiota Composition in a Healthy US Adult CohortMary E Kable, Elizabeth L Chin, David Storms, et al.BMC Bioinformatics|February 26, 2020
Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomesMichelle L Treiber, Diana H Taft, Ian Korf, et al.Pageof 14