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BMC Bioinformatics|October 6, 2009
Unsupervised statistical clustering of environmental shotgun sequencesAndrey Kislyuk, Srijak Bhatnagar, Jonathan Dushoff, et al.
Journal of Mathematical Biology|June 2, 2011
A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile dataXingpeng Jiang, Joshua S Weitz, Jonathan Dushoff
Theoretical Population Biology|October 22, 2009
Fluctuation domains in adaptive evolutionCarl Boettiger, Jonathan Dushoff, Joshua S Weitz
Journal of Theoretical Biology|August 16, 2016
Stochasticity and the limits to confidence when estimating R0 of Ebola and other emerging infectious diseasesBradford P Taylor, Jonathan Dushoff, Joshua S Weitz
Virus Evolution|October 7, 2022
When to be temperate: on the fitness benefits of lysis vs. lysogenyGuanlin Li, Michael H Cortez, Jonathan Dushoff, et al.
Epidemics|February 26, 2019
A practical generation-interval-based approach to inferring the strength of epidemics from their speedSang Woo Park, David Champredon, Joshua S Weitz, et al.
Proceedings of the National Academy of Sciences of the United States of America|December 2, 2020
Awareness-driven behavior changes can shift the shape of epidemics away from peaks and toward plateaus, shoulders, and oscillationsJoshua S Weitz, Sang Woo Park, Ceyhun Eksin, et al.
Epidemics|May 24, 2020
The time scale of asymptomatic transmission affects estimates of epidemic potential in the COVID-19 outbreakSang Woo Park, Daniel M Cornforth, Jonathan Dushoff, et al.
Epidemics|January 27, 2023
How time-scale differences in asymptomatic and symptomatic transmission shape SARS-CoV-2 outbreak dynamicsJeremy D Harris, Sang Woo Park, Jonathan Dushoff, et al.
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