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Communications Biology|April 4, 2025
Partially characterized topology guides reliable anchor-free scRNA-integrationChuan He, Paraskevas Filippidis, Steven H Kleinstein, et al.Nucleic Acids Research|December 17, 2020
Alignment free identification of clones in B cell receptor repertoiresOfir Lindenbaum, Nima Nouri, Yuval Kluger, et al.International Immunology|April 10, 2008
Improved methods for detecting selection by mutation analysis of Ig V region sequencesUri Hershberg, Mohamed Uduman, Mark J Shlomchik, et al.Nucleic Acids Research|August 8, 2013
Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlationsGur Yaari, Christopher R Bolen, Juilee Thakar, et al.Proceedings of the National Academy of Sciences of the United States of America|February 13, 2015
Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment allelesDaniel Gadala-Maria, Gur Yaari, Mohamed Uduman, et al.Nature Communications|June 9, 2016
Long-lived antigen-induced IgM plasma cells demonstrate somatic mutations and contribute to long-term protectionCaitlin Bohannon, Ryan Powers, Lakshmipriyadarshini Satyabhama, et al.Biorxiv : the Preprint Server for Biology|July 17, 2026
Assessing tensor decomposition quality of immune profiling data from a dictionary learning perspectiveAnna Konstorum, Jian Xing, Shuchin Aeron, et al.Plos Computational Biology|March 31, 2025
Supervised fine-tuning of pre-trained antibody language models improves antigen specificity predictionMeng Wang, Jonathan Patsenker, Henry Li, et al.Hepatology (Baltimore, Md.)|August 10, 2013
Dynamic expression profiling of type I and type III interferon-stimulated hepatocytes reveals a stable hierarchy of gene expressionChristopher R Bolen, Siyuan Ding, Michael D Robek, et al.Biorxiv : the Preprint Server for Biology|May 27, 2024
Supervised fine-tuning of pre-trained antibody language models improves antigen specificity predictionMeng Wang, Jonathan Patsenker, Henry Li, et al.Pageof 24