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Bulletin of Mathematical Biology|March 17, 2011
Parametric analysis of alignment and phylogenetic uncertaintyAnna-Sapfo Malaspinas, Nicholas Eriksson, Peter HugginsMolecular Ecology|November 28, 2015
Methods to characterize selective sweeps using time serial samples: an ancient DNA perspectiveAnna-Sapfo MalaspinasCell|October 19, 2019
An Ancient Genome from the Indus Valley CivilizationMaanasa Raghavan, Hannes Schroeder, Anna-Sapfo MalaspinasTheoretical Population Biology|January 27, 2011
Match probabilities in a finite, subdivided populationAnna-Sapfo Malaspinas, Montgomery Slatkin, Yun S SongNature Computational Science|May 14, 2024
A resampling-based approach to share reference panelsThéo Cavinato, Simone Rubinacci, Anna-Sapfo Malaspinas, et al.Peerj|March 31, 2022
Benchmarking metagenomics classifiers on ancient viral DNA: a simulation studyYami Ommar Arizmendi Cárdenas, Samuel Neuenschwander, Anna-Sapfo MalaspinasGenetics|August 2, 2012
Estimating allele age and selection coefficient from time-serial dataAnna-Sapfo Malaspinas, Orestis Malaspinas, Steven N Evans, et al.Molecular Biology and Evolution|April 20, 2012
Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarityMelinda A Yang, Anna-Sapfo Malaspinas, Eric Y Durand, et al.Genome Biology and Evolution|February 2, 2026
Assessing Ancient DNA Sampling Strategies for Natural Selection Inference in Humans Using Allele Frequency Time Series DataLucas Anchieri, Carlos Eduardo G Amorim, Samuel Neuenschwander, et al.Plos Biology|August 7, 2007
Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroupNadin Rohland, Anna-Sapfo Malaspinas, Joshua L Pollack, et al.Pageof 10