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Frontiers in Genetics|August 5, 2021
scGPS: Determining Cell States and Global Fate Potential of SubpopulationsMichael Thompson, Maika Matsumoto, Tianqi Ma, et al.Gigascience|September 11, 2019
ascend: R package for analysis of single-cell RNA-seq dataAnne Senabouth, Samuel W Lukowski, Jose Alquicira Hernandez, et al.American Journal of Human Genetics|May 8, 2026
The impact of sex on the immune system explored at the single-cell levelSeyhan Yazar, Jose Alquicira-Hernandez, Kristof Wing, et al.Genome Research|May 13, 2018
Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulationsQuan H Nguyen, Samuel W Lukowski, Han Sheng Chiu, et al.The Journal of Investigative Dermatology|July 3, 2018
Detection of HPV E7 Transcription at Single-Cell Resolution in EpidermisSamuel W Lukowski, Zewen K Tuong, Katharina Noske, et al.Intensive Care Medicine|June 29, 2021
The relationship between adrenocortical candidate gene expression and clinical response to hydrocortisone in patients with septic shockJeremy Cohen, Antje Blumenthal, Gabriel Cuellar-Partida, et al.Genome Biology|April 15, 2024
Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methodsDrew Neavin, Anne Senabouth, Himanshi Arora, et al.Genomics, Proteomics & Bioinformatics|December 11, 2020
Transcriptomic Profiling of Human Pluripotent Stem Cell-derived Retinal Pigment Epithelium over TimeGrace E Lidgerwood, Anne Senabouth, Casey J A Smith-Anttila, et al.Mucosal Immunology|April 1, 2026
Single-cell profiling of BAL in preschool cystic fibrosis reveals macrophage dysregulation and ivacaftor-modified inflammatory programs in the early life lungJovana Maksimovic, Shivanthan Shanthikumar, George Howitt, et al.Scientific Data|February 14, 2018
Single cell RNA sequencing of stem cell-derived retinal ganglion cellsMaciej Daniszewski, Anne Senabouth, Quan H Nguyen, et al.Pageof 3