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Current Opinion in Structural Biology|August 15, 2024
Structural and biophysical dissection of RNA conformational ensemblesSteve L Bonilla, Alisha N Jones, Danny Incarnato
Genome Biology|October 18, 2014
Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptomeDanny Incarnato, Francesco Neri, Francesca Anselmi, et al.
Nucleic Acids Research|July 19, 2013
MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targetsDanny Incarnato, Francesco Neri, Daniela Diamanti, et al.
Bioinformatics (Oxford, England)|October 22, 2015
RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing dataDanny Incarnato, Francesco Neri, Francesca Anselmi, et al.
Nature Communications|April 1, 2022
SHAPE-guided RNA structure homology search and motif discoveryEdoardo Morandi, Martijn J van Hemert, Danny Incarnato
Cell Chemical Biology|January 10, 2024
Causes, functions, and therapeutic possibilities of RNA secondary structure ensembles and alternative statesRitwika Bose, Irfana Saleem, Anthony M Mustoe
Nucleic Acids Research|June 13, 2018
RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modificationsDanny Incarnato, Edoardo Morandi, Lisa Marie Simon, et al.
Angewandte Chemie (International Ed. in English)|December 24, 2025
Site-Selective Ligand Selection by Mutational Profiling for Covalent RNA TargetingPhillip Yesley, Georgia Poulladofonou, Danny Incarnato, et al.
Cell Reports Methods|July 30, 2026
Rapid and reversible regulation of cell cycle progression in budding yeast using optogeneticsAndriana Koutsoumpa, Catherine Loukogiannaki, Danny Incarnato, et al.
Nature Protocols|June 10, 2016
Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysisFrancesco Neri, Danny Incarnato, Anna Krepelova, et al.
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