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BMC Genomics|June 15, 2014
Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichmentRebecca Worsley Hunt, Anthony Mathelier, Luis Del Peso, et al.Molecular Biology and Evolution|August 14, 2019
GEMME: A Simple and Fast Global Epistatic Model Predicting Mutational EffectsElodie Laine, Yasaman Karami, Alessandra CarboneProteins|June 15, 2019
Decrypting protein surfaces by combining evolution, geometry, and molecular dockingChloé Dequeker, Elodie Laine, Alessandra CarboneJournal of Chemical Information and Modeling|October 10, 2017
INTerface Builder: A Fast Protein-Protein Interface Reconstruction ToolChloé Dequeker, Elodie Laine, Alessandra CarbonePlos One|March 22, 2014
SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomesGuénola Drillon, Alessandra Carbone, Gilles FischerStructure (London, England : 1993)|May 22, 2018
Local Interaction Signal Analysis Predicts Protein-Protein Binding AffinityRaffaele Raucci, Elodie Laine, Alessandra CarboneMalaria Journal|June 9, 2017
Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomesJuliana Bernardes, Catherine Vaquero, Alessandra CarboneBioinformatics (Oxford, England)|July 15, 2025
LoRA-DR-suite: adapted embeddings predict intrinsic and soft disorder from protein sequencesGianluca Lombardi, Beatriz Seoane, Alessandra CarboneProteins|April 18, 2018
Hidden partners: Using cross-docking calculations to predict binding sites for proteins with multiple interactionsNathalie Lagarde, Alessandra Carbone, Sophie Sacquin-MoraJournal of Molecular Biology|August 19, 2008
Identification of protein interaction partners and protein-protein interaction sitesSophie Sacquin-Mora, Alessandra Carbone, Richard LaveryPageof 15