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Bioinformatics (Oxford, England)|May 13, 2022
Fast and accurate inference of gene regulatory networks through robust precision matrix estimationAntoine Passemiers, Yves Moreau, Daniele Raimondi
BMC Biology|January 14, 2021
Current cancer driver variant predictors learn to recognize driver genes instead of functional variantsDaniele Raimondi, Antoine Passemiers, Piero Fariselli, et al.
Genome Biology|October 5, 2023
Large sample size and nonlinear sparse models outline epistatic effects in inflammatory bowel diseaseNora Verplaetse, Antoine Passemiers, Adam Arany, et al.
Scientific Reports|December 29, 2024
A quantitative benchmark of neural network feature selection methods for detecting nonlinear signalsAntoine Passemiers, Pietro Folco, Daniele Raimondi, et al.
Genome Biology|April 4, 2025
Genomic prediction with kinship-based multiple kernel learning produces hypothesis on the underlying inheritance mechanisms of phenotypic traitsDaniele Raimondi, Nora Verplaetse, Antoine Passemiers, et al.
Scientific Reports|June 8, 2024
Biologically meaningful genome interpretation models to address data underdetermination for the leaf and seed ionome prediction in Arabidopsis thalianaDaniele Raimondi, Antoine Passemiers, Nora Verplaetse, et al.
Genome Biology|March 7, 2025
DAGIP: alleviating cell-free DNA sequencing biases with optimal transportAntoine Passemiers, Stefania Tuveri, Tatjana Jatsenko, et al.
Computational and Structural Biotechnology Journal|May 1, 2024
Gene regulatory network analysis identifies MYL1, MDH2, GLS, and TRIM28 as the principal proteins in the response of mesenchymal stem cells to Mg<sup>2+</sup> ionsJalil Nourisa, Antoine Passemiers, Farhad Shakeri, et al.
Clinical Chemistry|January 7, 2026
Copy-Number Profiling and Methylation-Based Tumor Typing during Prenatal Cell-Free DNA ScreeningStefania Tuveri, Tatjana Jatsenko, Dhanya Sudhakaran, et al.
Bioinformatics (Oxford, England)|August 23, 2024
MetDecode: methylation-based deconvolution of cell-free DNA for noninvasive multi-cancer typingAntoine Passemiers, Stefania Tuveri, Dhanya Sudhakaran, et al.
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