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Journal of Molecular Biology|November 8, 2020
A Scalable Computational Approach for Simulating Complexes of Multiple ChromosomesAntonio B Oliveira Junior, Vinícius G Contessoto, Matheus F Mello, et al.The Journal of Chemical Physics|March 19, 2025
The synergy between compartmentalization and motorization in chromatin architectureRonaldo J Oliveira, Antonio B Oliveira Junior, Vinícius G Contessoto, et al.The Journal of Physical Chemistry. B|July 28, 2021
Chromosome Modeling on Downsampled Hi-C Maps Enhances the Compartmentalization SignalAntonio B Oliveira Junior, Cynthia Perez Estrada, Erez Lieberman Aiden, et al.Journal of Chemical Theory and Computation|April 19, 2021
Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional MechanismsAntonio B Oliveira Junior, Xingcheng Lin, Prakash Kulkarni, et al.Journal of Molecular Biology|June 11, 2023
PyMEGABASE: Predicting Cell-Type-Specific Structural Annotations of Chromosomes Using the EpigenomeEsteban Dodero-Rojas, Matheus F Mello, Sumitabha Brahmachari, et al.Biophysical Journal|March 24, 2023
Structural reorganization and relaxation dynamics of axially stressed chromosomesBenjamin S Ruben, Sumitabha Brahmachari, Vinícius G Contessoto, et al.Proceedings of the National Academy of Sciences of the United States of America|January 23, 2026
A data-driven chromatin model reveals spatial and dynamic features of genome organizationAntonio B Oliveira Junior, Matheus F Mello, Ronaldo J Oliveira, et al.Journal of Chemical Information and Modeling|March 20, 2024
ELViM: Exploring Biomolecular Energy Landscapes through Multidimensional VisualizationRafael Giordano Viegas, Ingrid B S Martins, Murilo Nogueira Sanches, et al.Cell|July 12, 2024
Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sampleMarcela Sandoval-Velasco, Olga Dudchenko, Juan Antonio Rodríguez, et al.Pageof 1