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Frontiers in Genetics|September 9, 2021
LR Hunting: A Random Forest Based Cell-Cell Interaction Discovery Method for Single-Cell Gene Expression DataMin Lu, Yifan Sha, Tiago C Silva, et al.Proteomics|May 21, 2020
PathwayPCA: an R/Bioconductor Package for Pathway Based Integrative Analysis of Multi-Omics DataGabriel J Odom, Yuguang Ban, Antonio Colaprico, et al.Nature Communications|August 25, 2018
Polycomb complexes associate with enhancers and promote oncogenic transcriptional programs in cancer through multiple mechanismsHo Lam Chan, Felipe Beckedorff, Yusheng Zhang, et al.Cancer Discovery|May 16, 2019
Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to LeukemiaEmmalee R Adelman, Hsuan-Ting Huang, Alejandro Roisman, et al.Nucleic Acids Research|December 26, 2015
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA dataAntonio Colaprico, Tiago C Silva, Catharina Olsen, et al.Medrxiv : the Preprint Server for Health Sciences|February 14, 2024
Discovery of Oncogenic Mediator Genes in Rectal Cancer Chemotherapy Response using Gene Expression Data from Matched Tumor and Patient-Derived OrganoidHanchen Huang, Chao Wu, Antonio Colaprico, et al.Nature Communications|January 5, 2020
Interpreting pathways to discover cancer driver genes with MoonlightAntonio Colaprico, Catharina Olsen, Matthew H Bailey, et al.Nature Communications|November 2, 2021
Multi-omics analysis identifies therapeutic vulnerabilities in triple-negative breast cancer subtypesBrian D Lehmann, Antonio Colaprico, Tiago C Silva, et al.Oncogene|June 14, 2022
Distinct mechanisms of innate and adaptive immune regulation underlie poor oncologic outcomes associated with KRAS-TP53 co-alteration in pancreatic cancerJashodeep Datta, Anna Bianchi, Iago De Castro Silva, et al.Cell|April 7, 2018
Machine Learning Identifies Stemness Features Associated with Oncogenic DedifferentiationTathiane M Malta, Artem Sokolov, Andrew J Gentles, et al.Pageof 4