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Methods in Molecular Biology (Clifton, N.J.)|November 30, 2012
Mining regulatory network connections by ranking transcription factor target genes using time series expression dataAntti Honkela, Magnus Rattray, Neil D LawrenceBioinformatics (Oxford, England)|August 12, 2008
Gaussian process modelling of latent chemical species: applications to inferring transcription factor activitiesPei Gao, Antti Honkela, Magnus Rattray, et al.BMC Systems Biology|June 1, 2012
Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparisonMichalis K Titsias, Antti Honkela, Neil D Lawrence, et al.Bioinformatics (Oxford, England)|February 9, 2011
tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductorAntti Honkela, Pei Gao, Jonatan Ropponen, et al.Bioinformatics (Oxford, England)|May 8, 2012
Identifying differentially expressed transcripts from RNA-seq data with biological variationPeter Glaus, Antti Honkela, Magnus RattrayProceedings of the National Academy of Sciences of the United States of America|April 14, 2010
Model-based method for transcription factor target identification with limited dataAntti Honkela, Charles Girardot, E Hilary Gustafson, et al.Plos Computational Biology|May 17, 2014
Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course dataCiira wa Maina, Antti Honkela, Filomena Matarese, et al.Bioinformatics (Oxford, England)|August 29, 2015
Fast and accurate approximate inference of transcript expression from RNA-seq dataJames Hensman, Panagiotis Papastamoulis, Peter Glaus, et al.Proceedings of the National Academy of Sciences of the United States of America|October 7, 2015
Genome-wide modeling of transcription kinetics reveals patterns of RNA production delaysAntti Honkela, Jaakko Peltonen, Hande Topa, et al.BMC Bioinformatics|August 22, 2013
Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clustersJames Hensman, Neil D Lawrence, Magnus RattrayPageof 15