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STAR Protocols|February 3, 2021
PhenoMapping: a protocol to map cellular phenotypes to metabolic bottlenecks, identify conditional essentiality, and curate metabolic modelsAnush Chiappino-Pepe, Vassily Hatzimanikatis
Current Opinion in Microbiology|August 30, 2021
Genome reconstructions of metabolism of Plasmodium RBC and liver stagesAnush Chiappino-Pepe, Vikash Pandey, Oliver Billker
Plos Computational Biology|March 24, 2017
Bioenergetics-based modeling of Plasmodium falciparum metabolism reveals its essential genes, nutritional requirements, and thermodynamic bottlenecksAnush Chiappino-Pepe, Stepan Tymoshenko, Meriç Ataman, et al.
Elife|August 3, 2021
NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolismHoma MohammadiPeyhani, Anush Chiappino-Pepe, Kiandokht Haddadi, et al.
Nucleic Acids Research|August 24, 2023
Strategies to identify and edit improvements in synthetic genome segments episomallyAlexandra Rudolph, Akos Nyerges, Anush Chiappino-Pepe, et al.
Biorxiv : the Preprint Server for Biology|May 15, 2024
NADPH composite index analysis quantifies the relationship between compartmentalized NADPH dynamics and growth rates in cancer cellsSun Jin Moon, Anush Chiappino-Pepe, Wentao Dong, et al.
Proceedings of the National Academy of Sciences of the United States of America|November 7, 2022
A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactionsEvangelia Vayena, Anush Chiappino-Pepe, Homa MohammadiPeyhani, et al.
NPJ Systems Biology and Applications|February 1, 2020
Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale modelsNoushin Hadadi, Vikash Pandey, Anush Chiappino-Pepe, et al.
NPJ Systems Biology and Applications|February 1, 2020
Author Correction: Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale modelsNoushin Hadadi, Vikash Pandey, Anush Chiappino-Pepe, et al.
Cell Host & Microbe|January 29, 2020
Functional and Computational Genomics Reveal Unprecedented Flexibility in Stage-Specific Toxoplasma MetabolismAarti Krishnan, Joachim Kloehn, Matteo Lunghi, et al.
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