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Molecular Biology and Evolution|July 26, 2013
Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebratesAoife Doherty, James O McInerneyMolecular Biology and Evolution|June 23, 2012
Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction networkAoife Doherty, David Alvarez-Ponce, James O McInerneyMolecular Biology and Evolution|October 28, 2025
Classifying Convergences in the Light of Horizontal Gene Transfer: Epaktovars and XenotypesJames O McInerneyMolecular Biology and Evolution|February 25, 2026
Genomic Perplexity and the Evolution of Context-Dependent FunctionJames O McInerneyTrends in Ecology & Evolution|September 17, 2013
More than tree dimensions: inter-lineage evolution's ecological importanceJames O McInerneyMolecular Biology and Evolution|October 26, 2022
Prokaryotic Pangenomes Act as Evolving EcosystemsJames O McInerneyTrends in Ecology & Evolution|May 16, 2006
The causes of protein evolutionary rate variationJames O McInerneyGenes|August 31, 2019
Eukaryote Genes Are More Likely than Prokaryote Genes to Be CompositesYaqing Ou, James O McInerneyTrends in Ecology & Evolution|May 17, 2006
New methods ring changes for the tree of lifeJames O McInerney, Mark WilkinsonGene|December 7, 2002
An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequencesChristopher J Creevey, James O McInerneyPageof 8