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Cell Systems|June 23, 2026
Quantitative cytokine profiling of primary human macrophages reveals distinct single-cell modes of trained immunityAoife O'Farrell, Zijian Niu, Arjun RajBiorxiv : the Preprint Server for Biology|February 3, 2025
Innate Immune Memory is Stimulus SpecificAoife O'Farrell, Zijian Niu, Jingxin Li, et al.Cell Systems|June 19, 2026
Human macrophages encode stimulus-specific information of prior exposures through trained immunityAoife O'Farrell, Zijian Niu, Jingxin Li, et al.Cell Systems|November 20, 2025
Piscis: A loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learningZijian Niu, Aoife O'Farrell, Jingxin Li, et al.Biorxiv : the Preprint Server for Biology|February 14, 2024
Piscis: a novel loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learningZijian Niu, Aoife O'Farrell, Jingxin Li, et al.Nature Communications|March 21, 2026
AP-1 mediates cellular adaptation and memory formationJingxin Li, Pavithran T Ravindran, Aoife O'Farrell, et al.Biorxiv : the Preprint Server for Biology|August 2, 2024
AP-1 Mediates Cellular Adaptation and Memory Formation During Therapy ResistanceJingxin Li, Pavithran T Ravindran, Aoife O'Farrell, et al.Biorxiv : the Preprint Server for Biology|July 16, 2025
Lineage memory shapes viral resistance barriers in human skinLaura C Van Eyndhoven, Grant Kinsler, Jingchao Zhang, et al.Nature Communications|April 23, 2021
Disruption of the HER3-PI3K-mTOR oncogenic signaling axis and PD-1 blockade as a multimodal precision immunotherapy in head and neck cancerZhiyong Wang, Yusuke Goto, Michael M Allevato, et al.Elife|April 5, 2024
Post-transcriptional splicing can occur in a slow-moving zone around the geneAllison Coté, Aoife O'Farrell, Ian Dardani, et al.Pageof 2