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Plos Computational Biology|October 3, 2012
Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networksOded Magger, Yedael Y Waldman, Eytan Ruppin, et al.Cell Systems|November 11, 2025
An adversarial scheme for integrating multi-modal data on protein functionRami Nasser, Leah V Schaffer, Trey Ideker, et al.Molecular Systems Biology|June 10, 2011
PREDICT: a method for inferring novel drug indications with application to personalized medicineAssaf Gottlieb, Gideon Y Stein, Eytan Ruppin, et al.Algorithms for Molecular Biology : AMB|February 11, 2014
A minimum-labeling approach for reconstructing protein networks across multiple conditionsArnon Mazza, Irit Gat-Viks, Hesso Farhan, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 7, 2006
Efficient algorithms for detecting signaling pathways in protein interaction networksJacob Scott, Trey Ideker, Richard M Karp, et al.Bioinformatics (Oxford, England)|September 4, 2024
Multi-modal contrastive learning of subcellular organization using DICERami Nasser, Leah V Schaffer, Trey Ideker, et al.Cancer Research|November 6, 2009
TP53 cancerous mutations exhibit selection for translation efficiencyYedael Y Waldman, Tamir Tuller, Roded Sharan, et al.Proceedings of the National Academy of Sciences of the United States of America|January 18, 2007
Transcriptional regulation of protein complexes within and across speciesKai Tan, Tomer Shlomi, Hoda Feizi, et al.Nucleic Acids Research|June 25, 2004
CREME: Cis-Regulatory Module Explorer for the human genomeRoded Sharan, Asa Ben-Hur, Gabriela G Loots, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 5, 2022
ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational SignaturesNicholas Franzese, Jason Fan, Roded Sharan, et al.Pageof 20