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Nature Communications|January 5, 2020
CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing dataAkdes Serin Harmanci, Arif O Harmanci, Xiaobo Zhou
BMC Bioinformatics|April 22, 2011
TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequencesArif O Harmanci, Gaurav Sharma, David H Mathews
Biorxiv : the Preprint Server for Biology|August 23, 2023
Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial NetworksBin Li, Xinghua Shi, Hongchang Gao, et al.
Science Advances|February 2, 2022
Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studiesJames C Bayley, Caroline C Hadley, Arif O Harmanci, et al.
Frontiers in Physiology|April 18, 2025
Gene expression changes in human cerebral arteries following hemoglobin exposure: implications for vascular responses in SAHChathathayil M Shafeeque, Arif O Harmanci, Sithara Thomas, et al.
Biorxiv : the Preprint Server for Biology|September 2, 2025
Epigenetic Reactivation of CNS Endothelial Developmental Programs Triggers Adult Brain Angiogenesis, Promotes Post-Stroke Revascularization and Neuronal RegenerationSithara Thomas, Cikesh Chandran, Lalit K Ahirwar, et al.
Neuro-Oncology Advances|May 5, 2025
Inferred developmental origins of brain tumors from single-cell RNA-sequencing dataSu Wang, Rachel Naomi Curry, Malcolm F McDonald, et al.
Cancer Research Communications|November 27, 2024
Tumor Expression of CD83 Reduces Glioma Progression and Is Associated with Reduced ImmunosuppressionMalcolm F McDonald, Rachel Naomi Curry, Isabella O'Reilly, et al.
Journal of Neuro-Oncology|May 29, 2024
Leveraging single-cell sequencing to classify and characterize tumor subgroups in bulk RNA-sequencing dataArya Shetty, Su Wang, A Basit Khan, et al.
Journal of Neuro-Oncology|June 15, 2023
Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokersA Basit Khan, Rajan Patel, Malcolm F McDonald, et al.
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