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BMC Bioinformatics|April 22, 2011
TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequencesArif O Harmanci, Gaurav Sharma, David H Mathews
Nucleic Acids Research|November 23, 2014
Dynalign II: common secondary structure prediction for RNA homologs with domain insertionsYinghan Fu, Gaurav Sharma, David H Mathews
Biophysical Journal|July 25, 2017
Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping DataZhen Tan, Gaurav Sharma, David H Mathews
BMC Bioinformatics|April 21, 2007
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in DynalignArif Ozgun Harmanci, Gaurav Sharma, David H Mathews
Nucleic Acids Research|February 29, 2008
PARTS: probabilistic alignment for RNA joinT secondary structure predictionArif Ozgun Harmanci, Gaurav Sharma, David H Mathews
Nucleic Acids Research|May 12, 2009
Stochastic sampling of the RNA structural alignment spaceArif Ozgun Harmanci, Gaurav Sharma, David H Mathews
Nucleic Acids Research|October 17, 2017
TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologsZhen Tan, Yinghan Fu, Gaurav Sharma, et al.
Biorxiv : the Preprint Server for Biology|October 28, 2024
DecoyFinder: Identification of Contaminants in Sets of Homologous RNA SequencesMingyi Zhu, Jeffrey Zuber, Zhen Tan, et al.
Nature Communications|January 5, 2020
CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing dataAkdes Serin Harmanci, Arif O Harmanci, Xiaobo Zhou
Biorxiv : the Preprint Server for Biology|August 23, 2023
Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial NetworksBin Li, Xinghua Shi, Hongchang Gao, et al.
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