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Bioinformatics (Oxford, England)|October 24, 2014
Context similarity scoring improves protein sequence alignments in the midnight zoneArmin Meier, Johannes SödingPlos Computational Biology|October 27, 2015
Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology ModelingArmin Meier, Johannes SödingBioinformatics (Oxford, England)|November 9, 2004
Protein homology detection by HMM-HMM comparisonJohannes SödingBioinformatics (Oxford, England)|January 26, 2015
bbcontacts: prediction of β-strand pairing from direct coupling patternsJessica Andreani, Johannes SödingNucleic Acids Research|June 12, 2016
Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequencesMatthias Siebert, Johannes SödingBioinformatics (Oxford, England)|September 26, 2025
Enhancing genome recovery across metagenomic samples using MAGmaxArangasamy Yazhini, Johannes SödingNature Communications|July 1, 2018
Clustering huge protein sequence sets in linear timeMartin Steinegger, Johannes SödingCurrent Opinion in Structural Biology|April 5, 2011
Protein sequence comparison and fold recognition: progress and good-practice benchmarkingJohannes Söding, Michael RemmertBioessays : News and Reviews in Molecular, Cellular and Developmental Biology|August 26, 2003
More than the sum of their parts: on the evolution of proteins from peptidesJohannes Söding, Andrei N LupasBioinformatics (Oxford, England)|July 12, 2021
Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteinsSalma Sohrabi-Jahromi, Johannes SödingPageof 10