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Genome Biology|July 3, 2002
Tracking adaptive evolutionary events in genomic sequencesDavid A Liberles, Marta L WayneBMC Bioinformatics|October 17, 2025
SMILES alignment: a dynamic programming approach for the alignment of metabolites and other small organic moleculesAlexis L Tang, David A LiberlesGenome Biology and Evolution|September 28, 2021
Characterizing Amino Acid Substitution with Complete Linkage of Sites on a LineageTristan L Stark, David A LiberlesBMC Ecology and Evolution|December 15, 2023
Expectations of duplicate gene retention under the gene duplicability hypothesisAmanda E Wilson, David A LiberlesBMC Ecology and Evolution|May 3, 2023
Dosage balance acts as a time-dependent selective barrier to subfunctionalizationAmanda E Wilson, David A LiberlesJournal of Microbiology & Biology Education|May 27, 2026
Teaching bioinformatics with generative AI: judgment, uncertainty, and responsibilityAshley I Teufel, David A LiberlesThe Journal of Physical Chemistry Letters|August 12, 2015
Anatomy of the Photochemical Reaction: Excited-State Dynamics Reveals the C-H Acidity Mechanism of Methoxy Photo-oxidation on TitaniaGrigory Kolesov, Dmitry Vinichenko, Georgios A Tritsaris, et al.BMC Bioinformatics|June 1, 2005
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing dataRoald Rossnes, Ingvar Eidhammer, David A LiberlesGene|September 13, 2012
The evolution of catalytic residues and enzyme mechanism within the bacterial nucleoside phosphorylase superfamily 1Anke Konrad, Jure Piškur, David A LiberlesBMC Bioinformatics|May 1, 2004
Visualising very large phylogenetic trees in three dimensional hyperbolic spaceTimothy Hughes, Young Hyun, David A LiberlesPageof 13