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Radiotherapy and Oncology : Journal of the European Society for Therapeutic Radiology and Oncology|June 4, 2024
Longitudinal cell-free DNA characterization by low-coverage whole-genome sequencing in patients undergoing high-dose radiotherapyZsolt Balázs, Panagiotis Balermpas, Ivna Ivanković, et al.Medrxiv : the Preprint Server for Health Sciences|September 4, 2023
Insights into the Mechanisms and Structure of Breakage-Fusion-Bridge Cycles in Cervical Cancer using Long-Read SequencingIsabel Rodriguez, Nicole M Rossi, Ayse Keskus, et al.American Journal of Human Genetics|February 2, 2024
Insights into the mechanisms and structure of breakage-fusion-bridge cycles in cervical cancer using long-read sequencingIsabel Rodriguez, Nicole M Rossi, Ayse G Keskus, et al.Medrxiv : the Preprint Server for Health Sciences|January 13, 2025
Successful classification of clinical pediatric leukemia genetic subtypes via structural variant detection using HiFi long-read sequencingLisa A Lansdon, Byunggil Yoo, Ayse Keskus, et al.NPJ Genomic Medicine|April 9, 2026
Proof-of-concept study for the detection of somatic structural variant driver alterations using HiFi long-read sequencing in a pediatric leukemia cohortLisa A Lansdon, Byunggil Yoo, Ayse Keskus, et al.Biorxiv : the Preprint Server for Biology|September 4, 2024
DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologiesJimin Park, Daniel E Cook, Pi-Chuan Chang, et al.Nature Biotechnology|October 16, 2025
Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomaticJimin Park, Daniel E Cook, Pi-Chuan Chang, et al.Medrxiv : the Preprint Server for Health Sciences|April 8, 2024
Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long readsAyse Keskus, Asher Bryant, Tanveer Ahmad, et al.Nature Biotechnology|April 4, 2025
Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencingAyse G Keskus, Asher Bryant, Tanveer Ahmad, et al.Biorxiv : the Preprint Server for Biology|September 30, 2024
Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pairJennifer H McDaniel, Vaidehi Patel, Nathan D Olson, et al.Pageof 2