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Bioinformatics (Oxford, England)|December 28, 2018
Ancestral sequence reconstruction: accounting for structural information by averaging over replacement matricesAsher Moshe, Tal PupkoBioinformatics (Oxford, England)|January 25, 2024
Statistical framework to determine indel-length distributionElya Wygoda, Gil Loewenthal, Asher Moshe, et al.Bioinformatics (Oxford, England)|December 29, 2025
Efficient algorithms for simulating sequences along a phylogenetic treeElya Wygoda, Asher Moshe, Nimrod Serok, et al.Molecular Biology and Evolution|October 25, 2022
An Approximate Bayesian Computation Approach for Modeling Genome RearrangementsAsher Moshe, Elya Wygoda, Noa Ecker, et al.Genome Biology and Evolution|October 6, 2011
Inference of gain and loss events from phyletic patterns using stochastic mapping and maximum parsimony--a simulation studyOfir Cohen, Tal PupkoProceedings. Biological Sciences|June 25, 2002
A covarion-based method for detecting molecular adaptation: application to the evolution of primate mitochondrial genomesTal Pupko, Nicolas GaltierMolecular Biology and Evolution|November 4, 2005
An evolutionary space-time model with varying among-site dependenciesAdi Stern, Tal PupkoMolecular Biology and Evolution|October 8, 2009
Inference and characterization of horizontally transferred gene families using stochastic mappingOfir Cohen, Tal PupkoMolecular Biology and Evolution|September 1, 2021
A Probabilistic Model for Indel Evolution: Differentiating Insertions from DeletionsGil Loewenthal, Dana Rapoport, Oren Avram, et al.Molecular Biology and Evolution|November 18, 2006
A combined empirical and mechanistic codon modelAdi Doron-Faigenboim, Tal PupkoPageof 15