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Journal of Chemical Information and Modeling|January 2, 2014
BP-Dock: a flexible docking scheme for exploring protein-ligand interactions based on unbound structuresAshini Bolia, Z Nevin Gerek, S Banu OzkanPlos Computational Biology|October 15, 2011
Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanningZ Nevin Gerek, S Banu OzkanProtein Science : a Publication of the Protein Society|March 3, 2010
A flexible docking scheme to explore the binding selectivity of PDZ domainsZ Nevin Gerek, S Banu OzkanJournal of Chemical Information and Modeling|March 15, 2016
Adaptive BP-Dock: An Induced Fit Docking Approach for Full Receptor FlexibilityAshini Bolia, S Banu OzkanProteins|July 9, 2009
Identification of specificity and promiscuity of PDZ domain interactions through their dynamic behaviorZ Nevin Gerek, Ozlem Keskin, S Banu OzkanProteins|January 26, 2012
The binding affinities of proteins interacting with the PDZ domain of PICK1Ashini Bolia, Z Nevin Gerek, Ozlem Keskin, et al.Proteins|December 30, 2014
Conformational dynamics of nonsynonymous variants at protein interfaces reveals disease associationBrandon M Butler, Z Nevin Gerek, Sudhir Kumar, et al.Biochemical Society Transactions|September 25, 2013
The antiviral lectin cyanovirin-N: probing multivalency and glycan recognition through experimental and computational approachesBrian W Woodrum, Jason D Maxwell, Ashini Bolia, et al.Plos Computational Biology|April 6, 2012
Collective dynamics differentiates functional divergence in protein evolutionTyler J Glembo, Daniel W Farrell, Z Nevin Gerek, et al.Biophysical Journal|March 11, 2014
A flexible docking scheme efficiently captures the energetics of glycan-cyanovirin bindingAshini Bolia, Brian W Woodrum, Angelo Cereda, et al.Pageof 8