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Bioinformatics (Oxford, England)|September 9, 2023
A general framework for powerful confounder adjustment in omics association studiesAsmita Roy, Jun Chen, Xianyang ZhangPlos Computational Biology|January 14, 2026
Powerful large scale inference in high dimensional mediation analysisAsmita Roy, Xianyang ZhangBioinformatics (Oxford, England)|September 9, 2022
dICC: distance-based intraclass correlation coefficient for metagenomic reproducibility studiesJun Chen, Xianyang ZhangBioinformatics (Oxford, England)|July 13, 2021
D-MANOVA: fast distance-based multivariate analysis of variance for large-scale microbiome association studiesJun Chen, Xianyang ZhangCommunications Biology|June 8, 2026
Large language model consensus substantially improves the cell type annotation accuracy for scRNA-seq dataChen Yang, Xianyang Zhang, Jun ChenBiorxiv : the Preprint Server for Biology|April 10, 2026
Intercellular communication is a heritable dimension of human tissue architectureChen Yang, Xianyang Zhang, Jun ChenAnnals of Statistics|May 4, 2023
OPTIMAL FALSE DISCOVERY RATE CONTROL FOR LARGE SCALE MULTIPLE TESTING WITH AUXILIARY INFORMATIONHongyuan Cao, Jun Chen, Xianyang ZhangBiorxiv : the Preprint Server for Biology|March 27, 2026
Frequency-domain kernels enable atlas-scale detection of spatially variable genesChen Yang, Xianyang Zhang, Jun ChenGenome Biology|October 31, 2024
Winsorization greatly reduces false positives by popular differential expression methods when analyzing human population samplesLu Yang, Xianyang Zhang, Jun ChenPlos Computational Biology|February 17, 2026
Correction: BMDD: A probabilistic framework for accurate imputation of zero-inflated microbiome sequencing dataHuijuan Zhou, Jun Chen, Xianyang ZhangPageof 1,209