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NPJ Systems Biology and Applications|April 8, 2026
Systematic data-driven genome-scale metabolic model reduction for bioprocess modeling: CHO culture case studyAthanasios Antonakoudis, Anne RichelleComputational and Structural Biotechnology Journal|November 26, 2020
The era of big data: Genome-scale modelling meets machine learningAthanasios Antonakoudis, Rodrigo Barbosa, Pavlos Kotidis, et al.Biotechnology and Bioengineering|March 3, 2023
How reliable are Chinese hamster ovary (CHO) cell genome-scale metabolic models?Benjamin Strain, James Morrissey, Athanasios Antonakoudis, et al.Computational and Structural Biotechnology Journal|March 7, 2023
Genome-scale models as a vehicle for knowledge transfer from microbial to mammalian cell systemsBenjamin Strain, James Morrissey, Athanasios Antonakoudis, et al.Computational and Structural Biotechnology Journal|May 6, 2026
A Hybrid Modeling Framework for Predictive Digital Twins of CHO Cell CultureAnne Richelle, David Andersson, Athanasios Antonakoudis, et al.Cell Systems|December 11, 2025
A reconstruction of the mammalian secretory pathway identifies mechanisms regulating antibody productionHelen Masson, Jasmine Tat, Pablo Di Giusto, et al.Cell Systems|April 16, 2026
A community reconstruction of Chinese hamster metabolism and structural systems biology elucidate metabolic rewiring in lactate-free CHO cellsPablo Di Giusto, Dong-Hyuk Choi, Athanasios Antonakoudis, et al.Pageof 1