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Biorxiv : the Preprint Server for Biology
|
August 30, 2023
Informing virtual clinical trials of hepatocellular carcinoma with spatial multi-omics analysis of a human neoadjuvant immunotherapy clinical trial
Shuming Zhang, Atul Deshpande, Babita K Verma, et al.
Biorxiv : the Preprint Server for Biology
|
January 30, 2023
Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence
Shuming Zhang, Long Yuan, Ludmila Danilova, et al.
Cancer Research
|
June 11, 2024
Integration of Clinical Trial Spatial Multiomics Analysis and Virtual Clinical Trials Enables Immunotherapy Response Prediction and Biomarker Discovery
Shuming Zhang, Atul Deshpande, Babita K Verma, et al.
Bioinformatics (Oxford, England)
|
October 15, 2025
BIWT: a bioinformatics walkthrough for embedding spatial multiomics in agent-based models for virtual cells
Daniel R Bergman, Jeanette A I Johnson, Marwa Naji, et al.
Biorxiv : the Preprint Server for Biology
|
April 10, 2026
STAPLE: automating spatial transcriptomics analysis and AI interpretation
Dmitrijs Lvovs, Jeffrey Quinn, André Forjaz, et al.
Biorxiv : the Preprint Server for Biology
|
March 23, 2026
Deep Learning Enabled 3D Multi-Omic Analysis Reveals Molecular Signatures of Heterogeneous Response to Chemotherapy in Pancreatic Cancer
André Forjaz, Hengameh Mojdeganlou, Alens Valentin, et al.
Nature Cancer
|
November 19, 2021
Neoadjuvant Cabozantinib and Nivolumab Converts Locally Advanced HCC into Resectable Disease with Enhanced Antitumor Immunity
Won Jin Ho, Qingfeng Zhu, Jennifer Durham, et al.
Cell Systems
|
August 8, 2024
PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration
Alexander T F Bell, Jacob T Mitchell, Ashley L Kiemen, et al.
Cancer Immunology Research
|
August 15, 2025
Neoadjuvant immunotherapy promotes the formation of mature tertiary lymphoid structures in a remodeled pancreatic tumor microenvironment
Dimitrios N Sidiropoulos, Sarah M Shin, Meredith Wetzel, et al.
Cancer Discovery
|
May 21, 2026
Asynchronous evolution of epithelium and stroma differentiates precursor lesions from pancreatic cancer
Ahmed M Elhossiny, Padma Kadiyala, Jude Ogechukwu Okoye, et al.
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Search research articles
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Showing results (21-30 of 39) with videos related to
Sort By:
Page
of 4
Biorxiv : the Preprint Server for Biology
|
August 30, 2023
Informing virtual clinical trials of hepatocellular carcinoma with spatial multi-omics analysis of a human neoadjuvant immunotherapy clinical trial
Shuming Zhang, Atul Deshpande, Babita K Verma, et al.
Biorxiv : the Preprint Server for Biology
|
January 30, 2023
Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence
Shuming Zhang, Long Yuan, Ludmila Danilova, et al.
Cancer Research
|
June 11, 2024
Integration of Clinical Trial Spatial Multiomics Analysis and Virtual Clinical Trials Enables Immunotherapy Response Prediction and Biomarker Discovery
Shuming Zhang, Atul Deshpande, Babita K Verma, et al.
Bioinformatics (Oxford, England)
|
October 15, 2025
BIWT: a bioinformatics walkthrough for embedding spatial multiomics in agent-based models for virtual cells
Daniel R Bergman, Jeanette A I Johnson, Marwa Naji, et al.
Biorxiv : the Preprint Server for Biology
|
April 10, 2026
STAPLE: automating spatial transcriptomics analysis and AI interpretation
Dmitrijs Lvovs, Jeffrey Quinn, André Forjaz, et al.
Biorxiv : the Preprint Server for Biology
|
March 23, 2026
Deep Learning Enabled 3D Multi-Omic Analysis Reveals Molecular Signatures of Heterogeneous Response to Chemotherapy in Pancreatic Cancer
André Forjaz, Hengameh Mojdeganlou, Alens Valentin, et al.
Nature Cancer
|
November 19, 2021
Neoadjuvant Cabozantinib and Nivolumab Converts Locally Advanced HCC into Resectable Disease with Enhanced Antitumor Immunity
Won Jin Ho, Qingfeng Zhu, Jennifer Durham, et al.
Cell Systems
|
August 8, 2024
PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration
Alexander T F Bell, Jacob T Mitchell, Ashley L Kiemen, et al.
Cancer Immunology Research
|
August 15, 2025
Neoadjuvant immunotherapy promotes the formation of mature tertiary lymphoid structures in a remodeled pancreatic tumor microenvironment
Dimitrios N Sidiropoulos, Sarah M Shin, Meredith Wetzel, et al.
Cancer Discovery
|
May 21, 2026
Asynchronous evolution of epithelium and stroma differentiates precursor lesions from pancreatic cancer
Ahmed M Elhossiny, Padma Kadiyala, Jude Ogechukwu Okoye, et al.
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of 4