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Biorxiv : the Preprint Server for Biology|January 23, 2024
Comparative analysis of multiplexed in situ gene expression profiling technologiesAustin Hartman, Rahul SatijaBiorxiv : the Preprint Server for Biology|April 10, 2023
Phospho-seq: Integrated, multi-modal profiling of intracellular protein dynamics in single cellsJohn D Blair, Austin Hartman, Fides Zenk, et al.Nature Communications|August 12, 2025
Improving reproducibility of differentially expressed genes in single-cell transcriptomic studies of neurodegenerative diseases through meta-analysisNathan Nakatsuka, Drew Adler, Longda Jiang, et al.Biorxiv : the Preprint Server for Biology|October 28, 2024
A Reproducibility Focused Meta-Analysis Method for Single-Cell Transcriptomic Case-Control Studies Uncovers Robust Differentially Expressed GenesNathan Nakatsuka, Drew Adler, Longda Jiang, et al.Nature Communications|February 5, 2025
Phospho-seq: integrated, multi-modal profiling of intracellular protein dynamics in single cellsJohn D Blair, Austin Hartman, Fides Zenk, et al.Nature Reviews. Immunology|August 9, 2017
Single-cell RNA sequencing to explore immune cell heterogeneityEfthymia Papalexi, Rahul SatijaBiorxiv : the Preprint Server for Biology|February 17, 2023
CPA-Perturb-seq: Multiplexed single-cell characterization of alternative polyadenylation regulatorsMadeline H Kowalski, Hans-Hermann Wessels, Johannes Linder, et al.Genome Biology|December 25, 2019
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regressionChristoph Hafemeister, Rahul SatijaGenome Biology|January 19, 2022
Comparison and evaluation of statistical error models for scRNA-seqSaket Choudhary, Rahul SatijaPageof 11