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NAR Genomics and Bioinformatics|October 9, 2024
scATAcat: cell-type annotation for scATAC-seq dataAybuge Altay, Martin VingronIscience|September 8, 2023
Fluid shear stress-modulated chromatin accessibility reveals the mechano-dependency of endothelial SMAD1/5-mediated gene transcriptionJerome Jatzlau, Paul-Lennard Mendez, Aybuge Altay, et al.Nature Structural & Molecular Biology|October 6, 2025
Reporter CRISPR screens decipher cis-regulatory and trans-regulatory principles at the Xist locusTill Schwämmle, Gemma Noviello, Eleni Kanata, et al.Plos Computational Biology|February 13, 2023
AI reveals insights into link between CD33 and cognitive impairment in Alzheimer's DiseaseTamara Raschka, Meemansa Sood, Bruce Schultz, et al.Methods in Molecular Biology (Clifton, N.J.)|August 5, 2006
Comparative promoter analysis in vertebrate genomes with the CORG workbenchChristoph Dieterich, Martin VingronPlos Computational Biology|December 17, 2016
Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence PatternsMatthew Huska, Martin VingronAlgorithms for Molecular Biology : AMB|June 25, 2011
DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset ApproachAkdes Serin, Martin VingronJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 16, 2012
R2KS: a novel measure for comparing gene expression based on ranked gene listsShengyu Ni, Martin VingronPlos Computational Biology|June 30, 2026
CAdir: Joint clustering of cells and genes for single-cell transcriptomics with visualization-driven cluster quality assessmentClemens Kohl, Martin VingronBMC Genomics|February 29, 2012
Detection of interacting transcription factors in human tissues using predicted DNA binding affinityAlena Myšičková, Martin VingronPageof 23