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Scientific Reports|February 25, 2026
Revealing the inherent design principles of the genetic code via an error correcting code representationAyelet Aharon, Pazit Polak, Gur YaariBioinformatics (Oxford, England)|June 8, 2019
RAbHIT: R Antibody Haplotype Inference ToolAyelet Peres, Moriah Gidoni, Pazit Polak, et al.Briefings in Bioinformatics|November 3, 2024
An unbiased comparison of immunoglobulin sequence alignersThomas Konstantinovsky, Ayelet Peres, Pazit Polak, et al.Frontiers in Immunology|August 9, 2021
Immune2vec: Embedding B/T Cell Receptor Sequences in ℝ Using Natural Language ProcessingMiri Ostrovsky-Berman, Boaz Frankel, Pazit Polak, et al.Nucleic Acids Research|July 12, 2025
Enhancing sequence alignment of adaptive immune receptors through multi-task deep learningThomas Konstantinovsky, Ayelet Peres, Ran Eisenberg, et al.Frontiers in Immunology|April 1, 2021
Machine Learning Analysis of Naïve B-Cell Receptor Repertoires Stratifies Celiac Disease Patients and ControlsOr Shemesh, Pazit Polak, Knut E A Lundin, et al.Journal of Immunology (Baltimore, Md. : 1950)|May 27, 2022
Ontogeny of the B Cell Receptor Repertoire and Microbiome in MiceAmit Gilboa, Ronen Hope, Shira Ben Simon, et al.Briefings in Bioinformatics|May 16, 2024
Guidelines for reproducible analysis of adaptive immune receptor repertoire sequencing dataAyelet Peres, Vered Klein, Boaz Frankel, et al.Genome Medicine|January 7, 2022
T cell receptor beta germline variability is revealed by inference from repertoire dataAviv Omer, Ayelet Peres, Oscar L Rodriguez, et al.Genome Research|December 16, 2022
A somatic hypermutation-based machine learning model stratifies individuals with Crohn's disease and controlsModi Safra, Lael Werner, Ayelet Peres, et al.Pageof 11