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Trends in Microbiology|April 21, 2009
Looking for Darwin's footprints in the microbial worldB Jesse Shapiro, Lawrence A David, Jonathan Friedman, et al.Plos One|January 26, 2013
Sympatric speciation: when is it possible in bacteria?Jonathan Friedman, Eric J Alm, B Jesse ShapiroPlos Genetics|February 13, 2008
Comparing patterns of natural selection across species using selective signaturesB Jesse Shapiro, Eric J AlmPlos Computational Biology|October 3, 2012
Inferring correlation networks from genomic survey dataJonathan Friedman, Eric J AlmNature|December 21, 2010
Rapid evolutionary innovation during an Archaean genetic expansionLawrence A David, Eric J AlmNature|November 1, 2011
Ecology drives a global network of gene exchange connecting the human microbiomeChris S Smillie, Mark B Smith, Jonathan Friedman, et al.Science (New York, N.Y.)|April 12, 2012
Population genomics of early events in the ecological differentiation of bacteriaB Jesse Shapiro, Jonathan Friedman, Otto X Cordero, et al.Genome Biology|August 23, 2014
Host lifestyle affects human microbiota on daily timescalesLawrence A David, Arne C Materna, Jonathan Friedman, et al.Advances in Experimental Medicine and Biology|November 27, 2013
Signatures of natural selection and ecological differentiation in microbial genomesB Jesse ShapiroPageof 35