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Plos One|August 1, 2014
Fast and sensitive alignment of microbial whole genome sequencing reads to large sequence datasets on a desktop PC: application to metagenomic datasets and pathogen identificationLőrinc S Pongor, Roberto Vera, Balázs Ligeti
Methods in Molecular Biology (Clifton, N.J.)|October 28, 2016
CX, DPX, and PCW: Web Servers for the Visualization of Interior and Protruding Regions of Protein Structures in 3D and 1DBalázs Ligeti, Roberto Vera, János Juhász, et al.
Database : the Journal of Biological Databases and Curation|May 8, 2021
COVIDOUTCOME-estimating COVID severity based on mutation signatures in the SARS-CoV-2 genomeÁdám Nagy, Balázs Ligeti, János Szebeni, et al.
Biology Direct|September 17, 2017
Differential signal sensitivities can contribute to the stability of multispecies bacterial communitiesJános Juhász, Dóra Bihary, Attila Jády, et al.
Plos One|June 6, 2015
A Network-Based Target Overlap Score for Characterizing Drug Combinations: High Correlation with Cancer Clinical Trial ResultsBalázs Ligeti, Zsófia Pénzváltó, Roberto Vera, et al.
Frontiers in Microbiology|January 29, 2024
ProkBERT family: genomic language models for microbiome applicationsBalázs Ligeti, István Szepesi-Nagy, Babett Bodnár, et al.
Bioinformatics Advances|November 13, 2025
ProkBERT PhaStyle: accurate phage lifestyle prediction with pretrained genomic language modelsJudit Juhász, Noémi Ligeti-Nagy, Babett Bodnár, et al.
Database : the Journal of Biological Databases and Curation|July 13, 2013
JBioWH: an open-source Java framework for bioinformatics data integrationRoberto Vera, Yasset Perez-Riverol, Sonia Perez, et al.
Frontiers in Cellular and Infection Microbiology|March 28, 2015
Census of solo LuxR genes in prokaryotic genomesSanjarbek Hudaiberdiev, Kumari S Choudhary, Roberto Vera Alvarez, et al.
Entropy (Basel, Switzerland)|December 3, 2020
Occurrence of Ordered and Disordered Structural Elements in Postsynaptic Proteins Supports Optimization for Interaction DiversityAnnamária Kiss-Tóth, Laszlo Dobson, Bálint Péterfia, et al.
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