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Scientific Reports|March 9, 2022
Computing microRNA-gene interaction networks in pan-cancer using miRDriverBanabithi Bose, Matthew Moravec, Serdar BozdagCommunications Biology|September 7, 2024
Identifying cell lines across pan-cancer to be used in preclinical research as a proxy for patient tumor samplesBanabithi Bose, Serdar BozdagBiorxiv : the Preprint Server for Biology|July 15, 2025
A network model for patient-derived drug response in breast cancer integrating multi-omics datasetsBanabithi Bose, Barbara Stranger, Serdar BozdagBiorxiv : the Preprint Server for Biology|February 20, 2025
Top-DTI: Integrating Topological Deep Learning and Large Language Models for Drug Target Interaction PredictionMuhammed Talo, Serdar BozdagPlos Computational Biology|July 17, 2018
Cancerin: A computational pipeline to infer cancer-associated ceRNA interaction networksDuc Do, Serdar BozdagBioinformatics (Oxford, England)|July 15, 2025
Top-DTI: integrating topological deep learning and large language models for drug-target interaction predictionMuhammed Talo, Serdar BozdagBiorxiv : the Preprint Server for Biology|June 4, 2025
ProtFun: A Protein Function Prediction Model Using Graph Attention Networks with a Protein Large Language ModelMuhammed Talo, Serdar BozdagPlos One|February 13, 2016
A Feature Selection Algorithm to Compute Gene Centric Methylation from Probe Level Methylation DataBrittany Baur, Serdar BozdagGenomics|April 26, 2017
ProcessDriver: A computational pipeline to identify copy number drivers and associated disrupted biological processes in cancerBrittany Baur, Serdar BozdagBioinformatics Advances|October 31, 2025
ProtFun: a protein function prediction model using graph attention networks with a protein large language modelMuhammed Talo, Serdar BozdagPageof 7