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Bioinformatics Advances|March 27, 2023
WITCH-NG: efficient and accurate alignment of datasets with sequence length heterogeneityBaqiao Liu, Tandy WarnowJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 23, 2022
Scalable Species Tree Inference with External ConstraintsBaqiao Liu, Tandy WarnowAlgorithms for Molecular Biology : AMB|July 19, 2023
Weighted ASTRID: fast and accurate species trees from weighted internode distancesBaqiao Liu, Tandy WarnowBioinformatics Advances|February 15, 2023
DISCO+QR: rooting species trees in the presence of GDL and ILSJames Willson, Yasamin Tabatabaee, Baqiao Liu, et al.Algorithms for Molecular Biology : AMB|December 7, 2023
EMMA: a new method for computing multiple sequence alignments given a constraint subset alignmentChengze Shen, Baqiao Liu, Kelly P Williams, et al.Systematic Biology|August 27, 2021
DISCO: Species Tree Inference using Multicopy Gene Family Tree DecompositionJames Willson, Mrinmoy Saha Roddur, Baqiao Liu, et al.Methods in Molecular Biology (Clifton, N.J.)|December 8, 2020
Revisiting Evaluation of Multiple Sequence Alignment MethodsTandy WarnowPlos Currents|June 12, 2015
Concatenation Analyses in the Presence of Incomplete Lineage SortingTandy WarnowPlos Currents|March 31, 2012
Standard maximum likelihood analyses of alignments with gaps can be statistically inconsistentTandy WarnowMethods in Molecular Biology (Clifton, N.J.)|October 31, 2013
Large-scale multiple sequence alignment and tree estimation using SATéKevin Liu, Tandy WarnowPageof 13