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Analytical Chemistry|June 22, 2007
High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometryMichael R Hoopmann, Gregory L Finney, Michael J MacCossJournal of Proteome Research|September 9, 2008
A fast SEQUEST cross correlation algorithmJimmy K Eng, Bernd Fischer, Jonas Grossmann, et al.Talanta|January 24, 2012
Capillary electrophoresis with Orbitrap-Velos mass spectrometry detectionRoza Wojcik, Yihan Li, Michael J Maccoss, et al.Molecular & Cellular Proteomics : MCP|May 22, 2012
A mass spectrometry proteomics data management platformVagisha Sharma, Jimmy K Eng, Michael J Maccoss, et al.Journal of the American Society for Mass Spectrometry|August 31, 2016
Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0Matthew The, Michael J MacCoss, William S Noble, et al.Biorxiv : the Preprint Server for Biology|June 12, 2025
Improved quantitative accuracy in data-independent acquisition proteomics via retention time boundary imputationLincoln Harris, Michael Riffle, William Stafford Noble, et al.Nature Methods|August 1, 2019
Thesaurus: quantifying phosphopeptide positional isomersBrian C Searle, Robert T Lawrence, Michael J MacCoss, et al.Journal of Proteome Research|August 8, 2012
Learning score function parameters for improved spectrum identification in tandem mass spectrometry experimentsMarina Spivak, Michael S Bereman, Michael J Maccoss, et al.Plos Biology|August 1, 2008
Proteomics reveals novel Drosophila seminal fluid proteins transferred at matingGeoffrey D Findlay, Xianhua Yi, Michael J Maccoss, et al.Royal Society Open Science|July 31, 2025
Tissue-specific metabolomic signatures for a <i>doublesex</i> model of reduced sexual dimorphismRene Coig, Benjamin Harrison, Richard Johnson, et al.Pageof 32