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NAR Genomics and Bioinformatics|August 9, 2020
Comparison of visualization tools for single-cell RNAseq dataBatuhan Cakir, Martin Prete, Ni Huang, et al.Nature Protocols|March 26, 2025
CellPhoneDB v5: inferring cell-cell communication from single-cell multiomics dataKevin Troulé, Robert Petryszak, Batuhan Cakir, et al.Proceedings of the National Academy of Sciences of the United States of America|January 2, 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinomaClarisse Ganier, Pavel Mazin, Gabriel Herrera-Oropeza, et al.Science (New York, N.Y.)|May 28, 2026
A Hormone Cell Atlas maps the human endocrine system at cellular resolutionLijiang Fei, Isabel Huang-Doran, Katherine Lawler, et al.Nature|December 17, 2025
Spatiotemporal cellular map of the developing human reproductive tractValentina Lorenzi, Cecilia Icoresi-Mazzeo, Charlotte Cassie, et al.Stem Cell Research & Therapy|April 10, 2026
Generation of biologically responsive colon-like intestinal tissue patches from human induced pluripotent stem cells using a rapid co-differentiation platformWilliam Dalleywater, Alexander V Predeus, Batuhan Cakir, et al.Nature|November 20, 2024
A multi-omic atlas of human embryonic skeletal developmentKen To, Lijiang Fei, J Patrick Pett, et al.Nature Medicine|November 20, 2024
An organotypic atlas of human vascular cellsSam N Barnett, Ana-Maria Cujba, Lu Yang, et al.Nature Microbiology|April 15, 2024
Age-specific nasal epithelial responses to SARS-CoV-2 infectionMaximillian N J Woodall, Ana-Maria Cujba, Kaylee B Worlock, et al.Nucleic Acids Research|November 28, 2024
CZ CELLxGENE Discover: a single-cell data platform for scalable exploration, analysis and modeling of aggregated data, Shibla Abdulla, Brian Aevermann, et al.Pageof 2