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Physical Review Letters|November 30, 2025
Inferring Higher-Order Couplings with Neural NetworksAurélien Decelle, Alfonso de Jesús Navas Gómez, Beatriz SeoaneThe Journal of Chemical Physics|September 3, 2017
An Ising model for metal-organic frameworksNicolas Höft, Jürgen Horbach, Victor Martín-Mayor, et al.Proteins|April 18, 2018
Hidden partners: Using cross-docking calculations to predict binding sites for proteins with multiple interactionsNathalie Lagarde, Alessandra Carbone, Sophie Sacquin-MoraJournal of Molecular Biology|August 19, 2008
Identification of protein interaction partners and protein-protein interaction sitesSophie Sacquin-Mora, Alessandra Carbone, Richard LaveryBioinformatics (Oxford, England)|June 30, 2023
Deep Local Analysis deconstructs protein-protein interfaces and accurately estimates binding affinity changes upon mutationYasser Mohseni Behbahani, Elodie Laine, Alessandra CarboneBMC Bioinformatics|March 25, 2011
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional modelsJuliana S Bernardes, Alessandra Carbone, Gerson ZaveruchaNucleic Acids Research|May 23, 2021
MyCLADE: a multi-source domain annotation server for sequence functional explorationRiccardo Vicedomini, Clémence Blachon, Francesco Oteri, et al.Bioinformatics (Oxford, England)|April 25, 2020
Targeted domain assembly for fast functional profiling of metagenomic datasets with S3ALaurent David, Riccardo Vicedomini, Hugues Richard, et al.Nucleic Acids Research|December 1, 2016
JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structuresHugues Ripoche, Elodie Laine, Nicoletta Ceres, et al.Plos Computational Biology|February 4, 2020
Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical propertiesFlavia Corsi, Richard Lavery, Elodie Laine, et al.Pageof 13