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Microbial Genomics|November 28, 2017
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing readsMartin Hunt, Alison E Mather, Leonor Sánchez-Busó, et al.Antimicrobial Agents and Chemotherapy|April 13, 2016
Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPCAnna E Sheppard, Nicole Stoesser, Daniel J Wilson, et al.Journal of Clinical Microbiology|November 1, 2019
Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory SamplesKuiama Lewandowski, Yifei Xu, Steven T Pullan, et al.Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America|May 31, 2018
Clostridium difficile: Investigating Transmission Patterns Between Infected and Colonized Patients Using Whole Genome SequencingLing Yuan Kong, David W Eyre, Jacques Corbeil, et al.Environmental Microbiome|April 27, 2021
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samplesH Soon Gweon, Liam P Shaw, Jeremy Swann, et al.The Lancet. Infectious Diseases|November 20, 2012
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational studyTimothy M Walker, Camilla L C Ip, Ruth H Harrell, et al.Nucleic Acids Research|November 19, 2015
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomesSamuel C Forster, Hilary P Browne, Nitin Kumar, et al.Nutrients|February 9, 2018
In Vivo Assessment of Resistant Starch Degradation by the Caecal Microbiota of Mice Using RNA-Based Stable Isotope Probing-A Proof-of-Principle StudyElena Herrmann, Wayne Young, Verena Reichert-Grimm, et al.Infection and Immunity|August 23, 2005
Characterization of genetic and phenotypic diversity of invasive nontypeable Haemophilus influenzaeAlice L Erwin, Kevin L Nelson, Tendai Mhlanga-Mutangadura, et al.Nature Communications|May 24, 2014
Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureusRichard G Everitt, Xavier Didelot, Elizabeth M Batty, et al.Pageof 30