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Genome Biology|March 15, 2019
clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancersKieran R Campbell, Adi Steif, Emma Laks, et al.Plos Computational Biology|September 23, 2020
Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation dataCamila P E de Souza, Mirela Andronescu, Tehmina Masud, et al.Genome Biology|July 18, 2024
Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancersFarhia Kabeer, Hoa Tran, Mirela Andronescu, et al.Nature Communications|August 4, 2022
Accurate determination of CRISPR-mediated gene fitness in transplantable tumoursPeter Eirew, Ciara O'Flanagan, Jerome Ting, et al.Journal of the American Society for Mass Spectrometry|October 7, 2024
New Processes for Ionizing Nonvolatile Compounds in Mass Spectrometry: The Road of Discovery to Current State-of-the-ArtSarah Trimpin, Frank S Yenchick, Chuping Lee, et al.Nature|June 24, 2021
Clonal fitness inferred from time-series modelling of single-cell cancer genomesSohrab Salehi, Farhia Kabeer, Nicholas Ceglia, et al.Cell|November 16, 2019
Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome SequencingEmma Laks, Andrew McPherson, Hans Zahn, et al.Nature|October 26, 2022
Single-cell genomic variation induced by mutational processes in cancerTyler Funnell, Ciara H O'Flanagan, Marc J Williams, et al.Pageof 9