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Genome Research|April 1, 2017
Genome graphs and the evolution of genome inferenceBenedict Paten, Adam M Novak, Jordan M Eizenga, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 21, 2018
Superbubbles, Ultrabubbles, and CactiBenedict Paten, Jordan M Eizenga, Yohei M Rosen, et al.Nature Methods|January 16, 2023
Haplotype-aware pantranscriptome analyses using spliced pangenome graphsJonas A Sibbesen, Jordan M Eizenga, Adam M Novak, et al.Algorithms for Molecular Biology : AMB|July 14, 2017
A graph extension of the positional Burrows-Wheeler transform and its applicationsAdam M Novak, Erik Garrison, Benedict PatenBioinformatics (Oxford, England)|October 11, 2020
Efficient dynamic variation graphsJordan M Eizenga, Adam M Novak, Emily Kobayashi, et al.Bioinformatics (Oxford, England)|February 7, 2023
Optimal gap-affine alignment in O(s) spaceSantiago Marco-Sola, Jordan M Eizenga, Andrea Guarracino, et al.Bioinformatics (Oxford, England)|August 14, 2019
Haplotype-aware graph indexesJouni Sirén, Erik Garrison, Adam M Novak, et al.Nature Biotechnology|August 21, 2018
Variation graph toolkit improves read mapping by representing genetic variation in the referenceErik Garrison, Jouni Sirén, Adam M Novak, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|May 25, 2018
A Flow Procedure for Linearization of Genome Sequence GraphsDavid Haussler, Maciej Smuga-Otto, Jordan M Eizenga, et al.Nature Biotechnology|May 10, 2023
Pangenome graph construction from genome alignments with Minigraph-CactusGlenn Hickey, Jean Monlong, Jana Ebler, et al.Pageof 27