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Virus Evolution|October 25, 2016
Host ecology determines the dispersal patterns of a plant virusNídia Sequeira Trovão, Guy Baele, Bram Vrancken, et al.Biometrics|October 15, 2013
Multiple self-controlled case series for large-scale longitudinal observational databasesShawn E Simpson, David Madigan, Ivan Zorych, et al.Biology Letters|May 26, 2012
Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domesticationLucy A Weinert, John J Welch, Marc A Suchard, et al.Bioinformatics (Oxford, England)|January 20, 2024
Many-core algorithms for high-dimensional gradients on phylogenetic treesKarthik Gangavarapu, Xiang Ji, Guy Baele, et al.Systematic Biology|July 4, 2025
torchtree: flexible phylogenetic model development and inference using PyTorchMathieu Fourment, Matthew Macaulay, Christiaan J Swanepoel, et al.Biorxiv : the Preprint Server for Biology|October 3, 2025
Parallel algorithms for phylogenetic inference under a structured coalescent approximationYucai Shao, Marc A Suchard, Andrew Rambaut, et al.Proceedings of the National Academy of Sciences of the United States of America|April 28, 2026
Parallel algorithms for phylogenetic inference under a structured coalescent approximationYucai Shao, Marc A Suchard, Andrew Rambaut, et al.Methods in Ecology and Evolution|March 18, 2015
Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolutionBram Vrancken, Philippe Lemey, Andrew Rambaut, et al.The Annals of Applied Statistics|April 8, 2016
ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODELGabriela B Cybis, Janet S Sinsheimer, Trevor Bedford, et al.Journal of the American Medical Informatics Association : JAMIA|January 9, 2025
Objective study validity diagnostics: a framework requiring pre-specified, empirical verification to increase trust in the reliability of real-world evidenceMitchell M Conover, Patrick B Ryan, Yong Chen, et al.Pageof 42